HL_8RXH_127

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

8RXH|1|S4|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_127 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3556

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8RXH|1|S4|G|53
8RXH|1|S4|U|54
8RXH|1|S4|U|55
8RXH|1|S4|C|56
8RXH|1|S4|G|57
8RXH|1|S4|A|58
8RXH|1|S4|U|59
8RXH|1|S4|U|60
8RXH|1|S4|C|61

Current chains

Chain S4

E-site_tRNA_chain_S4

Nearby chains