HL_8RXH_130

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

ACGAGAU(PSU)

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_130 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.3785

The information below is about HL_9DE7_001

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RXH|1|L2|A|465
8RXH|1|L2|C|466
8RXH|1|L2|G|467
8RXH|1|L2|A|468
8RXH|1|L2|G|469
8RXH|1|L2|A|470
8RXH|1|L2|U|471
8RXH|1|L2|PSU|472

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Li

Putative 60S Ribosomal protein L36

Chain Lp

Putative 60S ribosomal protein L44