HL_8RXH_131
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- (PSU)UACACG(A2M)CAACG
- Length
- 13 nucleotides
- Bulged bases
- 8RXH|1|L2|A|1064, 8RXH|1|L2|C|1071
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_131 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.184
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8RXH|1|L2|PSU|1060
8RXH|1|L2|U|1061
8RXH|1|L2|A|1062
8RXH|1|L2|C|1063
8RXH|1|L2|A|1064
8RXH|1|L2|C|1065
8RXH|1|L2|G|1066
8RXH|1|L2|A2M|1067
8RXH|1|L2|C|1068
8RXH|1|L2|A|1069
8RXH|1|L2|A|1070
8RXH|1|L2|C|1071
8RXH|1|L2|G|1072
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LS
- Putative 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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