HL_8S8D_012

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8D_012 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.191

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8S8D|1|2|U|367
8S8D|1|2|A|368
8S8D|1|2|A|369
8S8D|1|2|G|370
8S8D|1|2|G|371
8S8D|1|2|G|372

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS5

Chain J

KLLA0E23673p

Chain L

KLLA0A10483p

Chain W

Small ribosomal subunit protein uS8

Chain X

KLLA0B11231p