HL_8S8D_023
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- 8S8D|1|2|U|832
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8D_023 not in the Motif Atlas
- Geometric match to HL_4V88_205
- Geometric discrepancy: 0.3381
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8S8D|1|2|A|828
8S8D|1|2|U|829
8S8D|1|2|U|830
8S8D|1|2|U|831
8S8D|1|2|U|832
8S8D|1|2|G|833
8S8D|1|2|U|834
8S8D|1|2|U|835
8S8D|1|2|G|836
8S8D|1|2|G|837
8S8D|1|2|U|838
8S8D|1|2|U|839
8S8D|1|2|U|840
8S8D|1|2|C|841
8S8D|1|2|U|842
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein eS6
- Chain L
- KLLA0A10483p
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