HL_8S8F_023
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8F_023 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.23
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8S8F|1|2|A|899
8S8F|1|2|G|900
8S8F|1|2|G|901
8S8F|1|2|U|902
8S8F|1|2|G|903
8S8F|1|2|A|904
8S8F|1|2|A|905
8S8F|1|2|A|906
8S8F|1|2|U|907
8S8F|1|2|U|908
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain B
- Small ribosomal subunit protein eS1
- Chain F
- KLLA0D10659p
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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