HL_8S8F_040
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- GA(PSU)CAGAUAC(5MC)
- Length
- 11 nucleotides
- Bulged bases
- 8S8F|1|2|U|1003
- QA status
- Modified nucleotides: PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8F_040 not in the Motif Atlas
- Homologous match to HL_8CRE_212
- Geometric discrepancy: 0.2604
- The information below is about HL_8CRE_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8S8F|1|2|G|996
8S8F|1|2|A|997
8S8F|1|2|PSU|998
8S8F|1|2|C|999
8S8F|1|2|A|1000
8S8F|1|2|G|1001
8S8F|1|2|A|1002
8S8F|1|2|U|1003
8S8F|1|2|A|1004
8S8F|1|2|C|1005
8S8F|1|2|5MC|1006
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor eIF-1
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