HL_8S8G_031

3D structure

PDB id

8S8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8S8G|1|2|G|1242, 8S8G|1|2|G|1244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8G_031 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2335

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8S8G|1|2|A|1237
8S8G|1|2|U|1238
8S8G|1|2|U|1239
8S8G|1|2|G|1240
8S8G|1|2|A|1241
8S8G|1|2|G|1242
8S8G|1|2|A|1243
8S8G|1|2|G|1244
8S8G|1|2|C|1245
8S8G|1|2|U|1246

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

KLLA0F07843p

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31