HL_8S8H_013
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8S8H|1|2|C|401, 8S8H|1|2|G|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8H_013 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.1222
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8S8H|1|2|C|392
8S8H|1|2|C|393
8S8H|1|2|U|394
8S8H|1|2|G|395
8S8H|1|2|A|396
8S8H|1|2|G|397
8S8H|1|2|A|398
8S8H|1|2|A|399
8S8H|1|2|A|400
8S8H|1|2|C|401
8S8H|1|2|G|402
8S8H|1|2|G|403
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- Small ribosomal subunit protein eS6
- Chain I
- 40S ribosomal protein S8
- Chain Y
- 40S ribosomal protein S24
Coloring options: