HL_8S8H_023

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8H_023 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3247

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8S8H|1|2|A|828
8S8H|1|2|U|829
8S8H|1|2|U|830
8S8H|1|2|U|831
8S8H|1|2|U|832
8S8H|1|2|G|833
8S8H|1|2|U|834
8S8H|1|2|U|835
8S8H|1|2|G|836
8S8H|1|2|G|837
8S8H|1|2|U|838
8S8H|1|2|U|839
8S8H|1|2|U|840
8S8H|1|2|C|841
8S8H|1|2|U|842

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain L

KLLA0A10483p