HL_8S8K_021

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

8S8K|1|2|G|765

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_021 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1366

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8S8K|1|2|U|764
8S8K|1|2|G|765
8S8K|1|2|PSU|766
8S8K|1|2|U|767
8S8K|1|2|C|768
8S8K|1|2|A|769
8S8K|1|2|A|770
8S8K|1|2|A|771
8S8K|1|2|G|772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24