HL_8SCB_025

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8SCB|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_025 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3034

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8SCB|1|5|G|1479
8SCB|1|5|C|1480
8SCB|1|5|C|1481
8SCB|1|5|G|1482
8SCB|1|5|C|1483
8SCB|1|5|G|1484
8SCB|1|5|C|1485
8SCB|1|5|C|1486

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain L

eL13

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36