HL_8SCB_035

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_035 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2113

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8SCB|1|5|U|2006
8SCB|1|5|G|2007
8SCB|1|5|U|2008
8SCB|1|5|A|2009
8SCB|1|5|A|2010
8SCB|1|5|C|2011
8SCB|1|5|A|2012
8SCB|1|5|A|2013

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain ii

Eukaryotic peptide chain release factor subunit 1

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1

Chain t

60S ribosomal protein L12