HL_8SCB_131

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8SCB|1|9|U|1300, 8SCB|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_131 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2295

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8SCB|1|9|A|1295
8SCB|1|9|U|1296
8SCB|1|9|U|1297
8SCB|1|9|G|1298
8SCB|1|9|A|1299
8SCB|1|9|U|1300
8SCB|1|9|A|1301
8SCB|1|9|G|1302
8SCB|1|9|C|1303
8SCB|1|9|U|1304

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31