HL_8SYL_012
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACACGUGGUAU
- Length
- 11 nucleotides
- Bulged bases
- 8SYL|1|A|G|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SYL_012 not in the Motif Atlas
- Homologous match to HL_5J7L_145
- Geometric discrepancy: 0.0876
- The information below is about HL_5J7L_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8SYL|1|A|A|382
8SYL|1|A|C|383
8SYL|1|A|A|384
8SYL|1|A|C|385
8SYL|1|A|G|386
8SYL|1|A|U|387
8SYL|1|A|G|388
8SYL|1|A|G|389
8SYL|1|A|U|390
8SYL|1|A|A|391
8SYL|1|A|U|392
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain Z
- 50S ribosomal protein L28
- Chain y
- Transfer RNA; tRNA
Coloring options: