3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
8SYL|1|A|A|751, 8SYL|1|A|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8SYL_022 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0786
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

8SYL|1|A|U|744
8SYL|1|A|1MG|745
8SYL|1|A|PSU|746
8SYL|1|A|5MU|747
8SYL|1|A|G|748
8SYL|1|A|A|749
8SYL|1|A|A|750
8SYL|1|A|A|751
8SYL|1|A|A|752
8SYL|1|A|A|753

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain 6
50S ribosomal protein L34
Chain D
50S ribosomal protein L3
Chain U
50S ribosomal protein L22

Coloring options:


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