HL_8SYL_103

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8SYL|1|x|C|16, 8SYL|1|x|G|18, 8SYL|1|x|G|19, 8SYL|1|x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SYL_103 not in the Motif Atlas

Homologous match to HL_5E81_211

Geometric discrepancy: 0.1318

The information below is about HL_5E81_211

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8SYL|1|x|C|13
8SYL|1|x|A|14
8SYL|1|x|G|15
8SYL|1|x|C|16
8SYL|1|x|C|17
8SYL|1|x|U|17|||A
8SYL|1|x|G|18
8SYL|1|x|G|19
8SYL|1|x|U|20
8SYL|1|x|A|21
8SYL|1|x|G|22

Current chains

Chain x

P-site initiator tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5