HL_8T2Y_098
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8T2Y|1|B5|U|1004
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T2Y_098 not in the Motif Atlas
- Homologous match to HL_8C3A_213
- Geometric discrepancy: 0.2284
- The information below is about HL_8C3A_213
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8T2Y|1|B5|G|997
8T2Y|1|B5|A|998
8T2Y|1|B5|PSU|999
8T2Y|1|B5|C|1000
8T2Y|1|B5|A|1001
8T2Y|1|B5|G|1002
8T2Y|1|B5|A|1003
8T2Y|1|B5|U|1004
8T2Y|1|B5|A|1005
8T2Y|1|B5|C|1006
8T2Y|1|B5|C|1007
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- Rps5p
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
- Chain MR
- messenger RNA
- Chain tP
- Transfer RNA; tRNA
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