HL_8T2Z_082

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8T2Z|1|B5|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_082 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.138

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8T2Z|1|B5|G|243
8T2Z|1|B5|A|244
8T2Z|1|B5|U|245
8T2Z|1|B5|G|246
8T2Z|1|B5|A|247
8T2Z|1|B5|U|248
8T2Z|1|B5|U|249
8T2Z|1|B5|C|250

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A