3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAAGGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T2Z_085 not in the Motif Atlas
Homologous match to HL_8P9A_198
Geometric discrepancy: 0.1192
The information below is about HL_8P9A_198
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_93535.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
6

Unit IDs

8T2Z|1|B5|U|368
8T2Z|1|B5|A|369
8T2Z|1|B5|A|370
8T2Z|1|B5|G|371
8T2Z|1|B5|G|372
8T2Z|1|B5|G|373

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BC
RPS2 isoform 1
Chain BJ
40S ribosomal protein S9-A
Chain BL
40S ribosomal protein S11-A
Chain BW
RPS22A isoform 1
Chain BX
40S ribosomal protein S23-A

Coloring options:


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