HL_8T2Z_090

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_090 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.0945

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8T2Z|1|B5|A|520
8T2Z|1|B5|A|521
8T2Z|1|B5|U|522
8T2Z|1|B5|G|523
8T2Z|1|B5|U|524
8T2Z|1|B5|A|525
8T2Z|1|B5|A|526
8T2Z|1|B5|A|527
8T2Z|1|B5|U|528
8T2Z|1|B5|A|529
8T2Z|1|B5|C|530
8T2Z|1|B5|C|531
8T2Z|1|B5|U|532

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S24-A