HL_8T2Z_095

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T2Z_095 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.0818

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8T2Z|1|B5|A|900
8T2Z|1|B5|G|901
8T2Z|1|B5|G|902
8T2Z|1|B5|U|903
8T2Z|1|B5|G|904
8T2Z|1|B5|A|905
8T2Z|1|B5|A|906
8T2Z|1|B5|A|907
8T2Z|1|B5|U|908
8T2Z|1|B5|U|909

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A

Chain MR

messenger RNA