HL_8T30_069

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8T30|1|A1|U|3351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T30_069 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.2395

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8T30|1|A1|C|3350
8T30|1|A1|U|3351
8T30|1|A1|U|3352
8T30|1|A1|G|3353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A