HL_8T3A_052
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- U(UR3)AAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8T3A|1|A1|A|2637, 8T3A|1|A1|C|2644
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3A_052 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1016
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8T3A|1|A1|U|2633
8T3A|1|A1|UR3|2634
8T3A|1|A1|A|2635
8T3A|1|A1|A|2636
8T3A|1|A1|A|2637
8T3A|1|A1|C|2638
8T3A|1|A1|G|2639
8T3A|1|A1|A|2640
8T3A|1|A1|U|2641
8T3A|1|A1|A|2642
8T3A|1|A1|A|2643
8T3A|1|A1|C|2644
8T3A|1|A1|G|2645
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AI
- 60S ribosomal protein L10
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: