HL_8T3A_112

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3A_112 not in the Motif Atlas

Homologous match to HL_4V8N_144

Geometric discrepancy: 0.1801

The information below is about HL_4V8N_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3A|1|tE|G|32
8T3A|1|tE|C|33
8T3A|1|tE|U|34
8T3A|1|tE|C|35
8T3A|1|tE|A|36
8T3A|1|tE|U|37
8T3A|1|tE|A|38
8T3A|1|tE|A|39
8T3A|1|tE|C|40

Current chains

Chain tE

E site tRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BQ

40S ribosomal protein S16-A

Chain C5

LSO2 isoform 1