HL_8T3B_038
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- 8T3B|1|A1|C|1762, 8T3B|1|A1|U|1763, 8T3B|1|A1|U|1764, 8T3B|1|A1|U|1765
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3B_038 not in the Motif Atlas
- Homologous match to HL_8C3A_039
- Geometric discrepancy: 0.4995
- The information below is about HL_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8T3B|1|A1|C|1759
8T3B|1|A1|A|1760
8T3B|1|A1|C|1761
8T3B|1|A1|C|1762
8T3B|1|A1|U|1763
8T3B|1|A1|U|1764
8T3B|1|A1|U|1765
8T3B|1|A1|G|1766
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain AU
- 60S ribosomal protein L22-A
- Chain AX
- 60S ribosomal protein L25
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