HL_8T3B_104

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8T3B|1|B5|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3B_104 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1196

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8T3B|1|B5|C|1309
8T3B|1|B5|U|1310
8T3B|1|B5|U|1311
8T3B|1|B5|A|1312
8T3B|1|B5|A|1313
8T3B|1|B5|U|1314
8T3B|1|B5|U|1315
8T3B|1|B5|G|1316

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A