HL_8T3D_022

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8T3D|1|A1|C|959, 8T3D|1|A1|A|962

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_022 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.1715

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8T3D|1|A1|C|958
8T3D|1|A1|C|959
8T3D|1|A1|PSU|960
8T3D|1|A1|C|961
8T3D|1|A1|A|962
8T3D|1|A1|G|963

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ao

60S ribosomal protein L42-A