HL_8T3D_060

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8T3D|1|A1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_060 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.1064

The information below is about HL_8P9A_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8T3D|1|A1|A|2897
8T3D|1|A1|G|2898
8T3D|1|A1|C|2899
8T3D|1|A1|A|2900
8T3D|1|A1|G|2901
8T3D|1|A1|A|2902
8T3D|1|A1|A|2903
8T3D|1|A1|U|2904

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2