HL_8T3F_047
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GUAAC(PSU)A(PSU)GAC
- Length
- 11 nucleotides
- Bulged bases
- 8T3F|1|A1|A|2256
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3F_047 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.2147
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T3F|1|A1|G|2253
8T3F|1|A1|U|2254
8T3F|1|A1|A|2255
8T3F|1|A1|A|2256
8T3F|1|A1|C|2257
8T3F|1|A1|PSU|2258
8T3F|1|A1|A|2259
8T3F|1|A1|PSU|2260
8T3F|1|A1|G|2261
8T3F|1|A1|A|2262
8T3F|1|A1|C|2263
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain DC
- Elongation factor 2
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