HL_8T3F_074
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UGAA(PSU)UGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8T3F|1|A4|U|81, 8T3F|1|A4|U|82, 8T3F|1|A4|C|84, 8T3F|1|A4|U|86
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3F_074 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.3934
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8T3F|1|A4|U|69
8T3F|1|A4|G|70
8T3F|1|A4|A|71
8T3F|1|A4|A|72
8T3F|1|A4|PSU|73
8T3F|1|A4|U|74
8T3F|1|A4|G|75
8T3F|1|A4|C|76
8T3F|1|A4|A|77
8T3F|1|A4|G|78
8T3F|1|A4|A|79
8T3F|1|A4|A|80
8T3F|1|A4|U|81
8T3F|1|A4|U|82
8T3F|1|A4|C|83
8T3F|1|A4|C|84
8T3F|1|A4|G|85
8T3F|1|A4|U|86
8T3F|1|A4|G|87
8T3F|1|A4|A|88
8T3F|1|A4|A|89
Current chains
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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