HL_8T4S_013

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T4S_013 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.1333

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8T4S|1|2|A|569
8T4S|1|2|C|570
8T4S|1|2|U|571
8T4S|1|2|U|572
8T4S|1|2|U|573
8T4S|1|2|A|574
8T4S|1|2|A|575
8T4S|1|2|A|576
8T4S|1|2|U|577
8T4S|1|2|C|578
8T4S|1|2|C|579
8T4S|1|2|U|580
8T4S|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24