HL_8T5D_039

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_039 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.0886

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8T5D|1|B|C|1363
8T5D|1|B|G|1364
8T5D|1|B|A|1365
8T5D|1|B|A|1366
8T5D|1|B|A|1367
8T5D|1|B|G|1368

Current chains

Chain B

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain X

50S ribosomal protein L28