3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8T5D|1|v|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5D_091 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.1047
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8T5D|1|v|G|786
8T5D|1|v|A|787
8T5D|1|v|U|788
8T5D|1|v|U|789
8T5D|1|v|A|790
8T5D|1|v|G|791
8T5D|1|v|A|792
8T5D|1|v|U|793
8T5D|1|v|A|794
8T5D|1|v|C|795
8T5D|1|v|C|796

Current chains

Chain v
16s RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain j
30S ribosomal protein S11
Chain t
30S ribosomal protein S21 (Fragment)
Chain x
lmRNA

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