HL_8T5H_027
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 8T5H|1|B|U|747, 8T5H|1|B|A|751, 8T5H|1|B|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T5H_027 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1089
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8T5H|1|B|U|744
8T5H|1|B|G|745
8T5H|1|B|U|746
8T5H|1|B|U|747
8T5H|1|B|G|748
8T5H|1|B|A|749
8T5H|1|B|A|750
8T5H|1|B|A|751
8T5H|1|B|A|752
8T5H|1|B|A|753
Current chains
- Chain B
- 23S
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain 2
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L3
- Chain S
- 50S ribosomal protein L22
Coloring options: