HL_8T5H_034

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_034 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.3336

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8T5H|1|B|C|1092
8T5H|1|B|G|1093
8T5H|1|B|U|1094
8T5H|1|B|A|1095
8T5H|1|B|A|1096
8T5H|1|B|U|1097
8T5H|1|B|A|1098
8T5H|1|B|G|1099

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6