HL_8T5H_035

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

8T5H|1|B|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_035 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1995

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8T5H|1|B|C|1172
8T5H|1|B|U|1173
8T5H|1|B|U|1174
8T5H|1|B|A|1175
8T5H|1|B|U|1176
8T5H|1|B|G|1177

Current chains

Chain B

23S

Nearby chains

Chain L

50S ribosomal protein L15