HL_8T5H_053

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8T5H|1|B|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_053 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2334

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8T5H|1|B|G|1910
8T5H|1|B|U|1911
8T5H|1|B|A|1912
8T5H|1|B|A|1913
8T5H|1|B|C|1914
8T5H|1|B|U|1915
8T5H|1|B|A|1916
8T5H|1|B|U|1917
8T5H|1|B|A|1918
8T5H|1|B|A|1919
8T5H|1|B|C|1920

Current chains

Chain B

23S

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain v

Small subunit ribosomal RNA; SSU rRNA