HL_8T5H_064

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8T5H|1|B|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_064 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0885

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8T5H|1|B|U|2404
8T5H|1|B|G|2405
8T5H|1|B|A|2406
8T5H|1|B|A|2407
8T5H|1|B|U|2408
8T5H|1|B|G|2409
8T5H|1|B|G|2410
8T5H|1|B|A|2411
8T5H|1|B|A|2412
8T5H|1|B|G|2413

Current chains

Chain B

23S

Nearby chains

Chain L

50S ribosomal protein L15