HL_8T5H_080

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8T5H|1|v|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_080 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1128

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8T5H|1|v|G|259
8T5H|1|v|G|260
8T5H|1|v|U|261
8T5H|1|v|A|262
8T5H|1|v|A|263
8T5H|1|v|C|264
8T5H|1|v|G|265
8T5H|1|v|G|266
8T5H|1|v|C|267

Current chains

Chain v

16S

Nearby chains

Chain p

30S ribosomal protein S17

Chain s

30S ribosomal protein S20