3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5H_081 not in the Motif Atlas
Homologous match to HL_5J7L_007
Geometric discrepancy: 0.0813
The information below is about HL_5J7L_007
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8T5H|1|v|U|296
8T5H|1|v|G|297
8T5H|1|v|A|298
8T5H|1|v|G|299
8T5H|1|v|A|300
8T5H|1|v|G|301

Current chains

Chain v
16S

Nearby chains

Chain c
30S ribosomal protein S4
Chain d
30S ribosomal protein S5
Chain k
30S ribosomal protein S12
Chain p
30S ribosomal protein S17

Coloring options:


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