HL_8T5H_098

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8T5H|1|v|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5H_098 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1152

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8T5H|1|v|G|1089
8T5H|1|v|U|1090
8T5H|1|v|U|1091
8T5H|1|v|A|1092
8T5H|1|v|A|1093
8T5H|1|v|G|1094
8T5H|1|v|U|1095
8T5H|1|v|C|1096

Current chains

Chain v

16S

Nearby chains

Chain f

30S ribosomal protein S7