HL_8T8C_065

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8T8C|1|1A|G|2751, 8T8C|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T8C_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0398

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8T8C|1|1A|C|2745
8T8C|1|1A|U|2746
8T8C|1|1A|G|2747
8T8C|1|1A|A|2748
8T8C|1|1A|A|2749
8T8C|1|1A|A|2750
8T8C|1|1A|G|2751
8T8C|1|1A|C|2752
8T8C|1|1A|A|2753
8T8C|1|1A|U|2754
8T8C|1|1A|C|2755
8T8C|1|1A|U|2756
8T8C|1|1A|A|2757
8T8C|1|1A|A|2758
8T8C|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6