HL_8TZZ_003

3D structure

PDB id

8TZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpG Cas9 with NGC PAM DNA target

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8TZZ_003 not in the Motif Atlas

Geometric match to HL_4LFB_028

Geometric discrepancy: 0.2024

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8TZZ|1|B|U|72
8TZZ|1|B|G|73
8TZZ|1|B|A|74
8TZZ|1|B|A|75
8TZZ|1|B|A|76
8TZZ|1|B|A|77

Current chains

Chain B

RNA (98-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1