HL_8UD6_065

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8UD6|1|1A|G|2751, 8UD6|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0343

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8UD6|1|1A|C|2745
8UD6|1|1A|U|2746
8UD6|1|1A|G|2747
8UD6|1|1A|A|2748
8UD6|1|1A|A|2749
8UD6|1|1A|A|2750
8UD6|1|1A|G|2751
8UD6|1|1A|C|2752
8UD6|1|1A|A|2753
8UD6|1|1A|U|2754
8UD6|1|1A|C|2755
8UD6|1|1A|U|2756
8UD6|1|1A|A|2757
8UD6|1|1A|A|2758
8UD6|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6