HL_8UD6_156

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8UD6|1|2A|A|1780, 8UD6|1|2A|C|1781, 8UD6|1|2A|C|1782, 8UD6|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD6_156 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0418

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8UD6|1|2A|U|1777
8UD6|1|2A|U|1778
8UD6|1|2A|U|1779
8UD6|1|2A|A|1780
8UD6|1|2A|C|1781
8UD6|1|2A|C|1782
8UD6|1|2A|A|1783
8UD6|1|2A|A|1784
8UD6|1|2A|A|1785
8UD6|1|2A|A|1786
8UD6|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22