HL_8UD7_178

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8UD7|1|2A|G|2751, 8UD7|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD7_178 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0728

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8UD7|1|2A|C|2745
8UD7|1|2A|U|2746
8UD7|1|2A|G|2747
8UD7|1|2A|A|2748
8UD7|1|2A|A|2749
8UD7|1|2A|A|2750
8UD7|1|2A|G|2751
8UD7|1|2A|C|2752
8UD7|1|2A|A|2753
8UD7|1|2A|U|2754
8UD7|1|2A|C|2755
8UD7|1|2A|U|2756
8UD7|1|2A|A|2757
8UD7|1|2A|A|2758
8UD7|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13