3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UD7_198 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.0757
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8UD7|1|2a|C|689
8UD7|1|2a|G|690
8UD7|1|2a|G|691
8UD7|1|2a|U|692
8UD7|1|2a|G|693
8UD7|1|2a|A|694
8UD7|1|2a|A|695
8UD7|1|2a|A|696
8UD7|1|2a|U|697
8UD7|1|2a|G|698

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2g
30S ribosomal protein S7
Chain 2k
30S ribosomal protein S11
Chain 2v
MF-mRNA
Chain 2y
Transfer RNA; tRNA

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