HL_8UD8_065

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8UD8|1|1A|G|2751, 8UD8|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UD8_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0444

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8UD8|1|1A|C|2745
8UD8|1|1A|U|2746
8UD8|1|1A|G|2747
8UD8|1|1A|A|2748
8UD8|1|1A|A|2749
8UD8|1|1A|A|2750
8UD8|1|1A|G|2751
8UD8|1|1A|C|2752
8UD8|1|1A|A|2753
8UD8|1|1A|U|2754
8UD8|1|1A|C|2755
8UD8|1|1A|U|2756
8UD8|1|1A|A|2757
8UD8|1|1A|A|2758
8UD8|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6