HL_8UIK_054

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8UIK|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UIK_054 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3366

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8UIK|1|L5|G|3757
8UIK|1|L5|U|3758
8UIK|1|L5|A|3759
8UIK|1|L5|A|3760
8UIK|1|L5|C|3761
8UIK|1|L5|U|3762
8UIK|1|L5|A|3763
8UIK|1|L5|U|3764
8UIK|1|L5|G|3765
8UIK|1|L5|A|3766
8UIK|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA